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Lecturer:
Prof. Dr. Ernst W. Mayr,
Dr. Volker Heun
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Area:
4 lectures per week
Bioinformatics: mandatory course (Bachelor/Diploma)
Computer Science: advanced course in area III (Theoretical
Computer Science)
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Time and Place:
Tue 10h c.t. - 11:45, lecture hall 0220
Fri 10h c.t. - 11:45, lecture hall 0220
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Exercises:
2 hours per week exercises accompanying the lectures
Thu 12h c.t. - 13:45, lecture hall 1200
Teaching Assistant: Moritz Maaß
Course Certificate: To get a course certificate students must
get at least 40% on the homework assignments and
pass the final exam.
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Audience:
graduate students of computer science
students with computer science as minor
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Prerequisites:
1st and 2nd year courses
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Recommended for:
In-depth knowledge in topic Algorithms
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Contents:
- Basic Concepts of Biology
- Physical Mapping
- Phylogenetic Trees
- Hidden Markov Models
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Related and Advanced Lectures:
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Lecture Notes:
Lectore Notes of Part I and addenda are
available.
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References:
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P. Clote, R. Backofen:
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Computational Molecular Biology - An Introduction
Wiley, 2000.
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R. Durbin, S. Eddy, A. Krogh, G. Mitchinson:
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Biological Sequence Analysis -
Probabilistic Models of Proteins and Nucleic Acids
Cambridge University Press, 1998.
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D. Gusfield:
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Algorithms on Strings, Trees, and Sequences -
Computer Science and Molecular Biology
Cambridge University Press, 1997.
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D.W. Mount:
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Bioinformatics - Sequence and Genome Analysis
Cold Spring Harbor Laboratory Press, 2001.
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P.A. Pevzner:
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Computational Molecular Biology - An Algorithmic Approach
MIT Press, 2000.
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J. Setubal, J. Meidanis:
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Introduction to Computational Molecular Biology
PWS, 1997.
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M.S. Waterman:
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Introduction to Computational Biology -
Maps, Sequences and Genomes
Chapmann and Hall, 1995
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Office Hours:
look here
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