Fakultät für Informatik - Technische Universität München Lehrstuhl für Effiziente Algorithmen

Publications of Arno Buchner

1. PAST: fast structure-based searching in the PDB
   Täubig H, Buchner A, Griebsch J.
   Nucleic Acids Research; 2006 July; 34:W20-23 (Web Server issue)
   

2. Fungal endophytes in potato roots studied by traditional isolation and cultivation-independent DNA-based methods
   Monika Götz, Helgard Nirenberg, Sibylle Krause, Heike Wolters, Siegfried Draeger, Arno Buchner, Jana Lottmann, Gabriele Berg, Kornelia Smalla
   FEMS Microbiology Ecology, December 2006; Vol 58(3), p. 404-413
   

3. ARB: a software environment for sequence data
   Wolfgang Ludwig, Oliver Strunk, Ralf Westram, Lothar Richter, Harald Meier, Yadhukumar, Arno Buchner , Tina Lai, Susanne Steppi, Gangolf Jobb, Wolfram Förster, Igor Brettske, Stefan Gerber, Anton W. Ginhart, Oliver Gross, Silke Grumann, Stefan Hermann, Ralf Jost, Andreas König, Thomas Liss, Ralph Lüßmann, Michael May, Björn Nonhoff, Boris Reichel, Robert Strehlow, Alexandros Stamatakis, Norbert Stuckmann, Alexander Vilbig, Michael Lenke, Thomas Ludwig, Arndt Bode and Karl-Heinz Schleifer
   Nucleic Acids Research; April 2004; Vol. 32(4), p. 1363-1371
   

4. Dynamics of Fungal Communities in Bulk and Maize Rhizosphere Soil in the Tropics
   Newton C. Marcial Gomes, Olajire Fagbola, Rodrigo Costa, Norma Gouvea Rumjanek, Arno Buchner, Leda Mendona-Hagler and Kornelia Smalla
   Applied and Environmental Microbiology; July 2003; Vol. 69 (7), p. 3758-3766
   

5. Bulk and Rhizosphere Soil Bacterial Communities Studied by Denaturing Gradient Gel Electrophoresis: Plant-Dependent Enrichment and Seasonal Shifts Revealed
   K. Smalla, G. Wieland, A. Buchner, A. Zock, J. Parzy, S. Kaiser, N. Roskot, H. Heuer and G. Berg
   Applied and Environmental Microbiology; October 2001; Vol. 67 (10), p. 4742-4751
   

6. Successful strategy for the selection of new strawberry-associated rhizobacteria antagonistic to Verticillium wilt
   Berg, G., Kurze, S., Buchner, A., Wellington, E. M. and K. Smalla
   Canadian Journal of Microbiology; 2000; Vol. 46, p.1128-1137
   

1. A Method for Fast Approximate Searching of Polypeptide Structures in the PDB
   H. Täubig, A. Buchner, J. Griebsch
   German Conference on Bioinformatics 2004 (GCB'04), (October 04-06 2004, Bielefeld/ Germany)
   Conference Proceedings, p. 65-74
   

1. A Fast Method for Motif Detection and Searching in a Protein Structure Database
   A. Buchner, H. Täubig
   Technical Report TUM-I0314, Computer Science Dept., TU München, Sep. 2003
   

1. A Fast Algorithm for the Iterative Calculation of Betweeness Centrality
   J. Griebsch, T. Binder, A. Buchner
   German Conference on Bioinformatics (GCB'04), (October 04-06 2004, Bielefeld/ Germany)
   Conference Proceedings, Discovery Notes and Poster Abstracts, p. 114-115
   

2. A Fast Method for Motif Detection and Searching in a Protein Structure Database
   H. Täubig, A. Buchner, J. Griebsch
   German Conference on Bioinformatics 2003 (GCB'03), (12.-14. October 2003, Munich/ Germany)
   Conference Proceedings, Vol.II, p. 186-188
   

3. ARB_genome: A software environment for functional genomics
   R. Westram, A. Buchner, L. Richter, Yadhukumar, T. Lai, H. Meier, G. Jobb, W. Ludwig
   "Gegenwart und Zukunft der bakteriellen Genomforschung in Deutschland", (10.-11. October 2002, Bielefeld/ Germany)
   Conference Proceedings, p. 115
   

4. Long term study of bacterial community shifts during the successful bioremediation of a CCl4 contaminated aquifer
   Arno Buchner and Torge Richter, Holger Heuer, Ellen Krögerrecklenfort, Kornelia Smalla, Frank Gebhard, Katrin Lining and James Tiedje
   "Microbiology 2000" VAAM Annual Meeting, (March 2000, Munich/ Germany)
   Biospektrum VAAM Sonderausgabe 2000
   

5. Monitoring bacterial community shifts during in situ bioremediation of CCl4 contaminated aquifer
   Arno Buchner, Torge Richter, Ellen Krögerrecklenfort, Frank Gebhard, Katrin Lining, James Tiedje and Kornelia Smalla
   VAAM Annual Meeting 1999, (March 1999, Göttingen/ Germany)
   Biospektrum VAAM Sonderausgabe 1999