LEA

References

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Text indexing and dictionary matching with one error.
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[AN07] Abdullah Arslan and Johannes Nowak.
Efficient approximate dictionary look-up for long words over small alphabets.
Unpublished manuscript, 2007.
[AZS99] Anurag Acharya, Huican Zhu, and Kai Shen.
Adaptive algorithms for cache-efficient trie search.
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[Cli05] Raphaël Clifford.
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A linear size index for approximate pattern matching.
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[EGM05] Chiara Epifanio, Alessandra Gabriele, and Filippo Mignosi.
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[EKN07] Stefan Eckhardt, Sven Kosub, and Johannes Nowak.
Smoothed analysis of trie height.
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[FCFM00] Martin Farach-Colton, Paolo Ferragina, and S. Muthukrishnan.
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[FG96] Paolo Ferragina and Roberto Grossi.
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[FG99] Paolo Ferragina and Roberto Grossi.
The string B-tree: A new data structure for string search in external memory and its applications.
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[GMRS03] Alessandra Gabriele, Filippo Mignosi, Antonio Restivo, and Marinella Sciortino.
Indexing structures for approximate string matching.
In Proceedings of the 5th Italian Conference on Algorithms and Complexity (CIAC'03),
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[HAI02] Ela Hunt, Malcolm P. Atkinson, and Robert W. Irving.
Database indexing for large DNA and protein sequence collections.
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[JTU96] Petteri Jokinen, Jorma Tarhio, and Esko Ukkonen.
A comparison of approximate string matching algorithms.
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[JU91] Petteri Jokinen and Esko Ukkonen.
Two algorithms for approximate string matching in static texts.
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[KA06] Pang Ko and Srinivas Aluru.
Obtaining provably good performance from suffix trees in secondary storage.
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[Maa03] Moritz G. Maass.
Linear bidirectional on-line construction of affix trees.
Algorithmica, 37(1):43-74, June 2003.
[Maa04] Moritz G. Maass.
Average-case analysis of approximate trie search.
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[Maa06] Moritz G. Maass.
Matching statistics: efficient computation and a new practical algorithm for the multiple common substring problem.
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[McC76] Edward M. McCreight.
A space-economical suffix tree construction algorithm.
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Suffix arrays: A new method for on-line string searches.
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[MN05a] Moritz G. Maass and Johannes Nowak.
A new method for approximate indexing and dictionary lookup with one error.
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[MN05b] Moritz G. Maass and Johannes Nowak.
Text indexing with errors.
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[MN07] Moritz G. Maass and Johannes Nowak.
Text indexing with errors.
Journal of Discrete Algorithms, 2007. to appear.
[Mye94] Eugene W. Myers.
A sublinear algorithm for approximate keyword searching.
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[Nav01] Gonzalo Navarro.
A guided tour to approximate string matching.
ACM Computing Surveys, 33(1):31-88, March 2001.
[NBY98] Gonzalo Navarro and Ricardo Baeza-Yates.
A practical q-gram index for text retrieval allowing errors.
CLEI Electronic Journal, 1(2), December 1998.
[NBY00] Gonzalo Navarro and Ricardo Baeza-Yates.
A hybrid indexing method for approximate string matching.
Journal of Discrete Algorithms, 1(1):205-239, 2000.
[NC06] Gonzalo Navarro and Edgar Cha'vez.
A metric index for approximate string matching.
Theoretical Computer Science, 352:266-279, March 2006.
[Now04] Johannes Nowak.
A new indexing method for approximate pattern matching with one mismatch.
Diploma thesis, Inst. f. Informatik, Technische Universita"t Mu"nchen, February 2004.
[SM96] Heping Shang and Timothy H. Merrett.
Tries for approximate string matching.
IEEE Transactions on Knowledge and Data Engineering, 8(4):540-547, August 1996.
[SOD96] ACM/SIAM. Proceedings of the 7th Symposium on Discrete Algorithms (SODA'96), January 1996.
[SPI06] Proceedings of the 13th Symposium on String Processing and Information Retrieval (SPIRE'06),
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[ST96] Erkki Sutinen and Jorma Tarhio.
Filtration with q-samples in approximate string matching.
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[ST04] Daniel A. Spielman and Shang-Hua Teng.
Smoothed analysis of algorithms: Why the simplex algorithm usually takes polynomial time.
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[Szp01] Wojciech Szpankowski.
Average Case Analysis of Algorithms on Sequences. Wiley, 2001.
[TBG04] Hanjo Täubig, Arno Buchner, and Jan H. Griebsch.
A method for fast approximate searching of polypeptide structures in the PDB.
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volume P-53 of Lecture Notes in Informatics, pages 65-74. Ko"llen Verlag, October 2004.
[TBG06] Hanjo Täubig, Arno Buchner, and Jan H. Griebsch.
PAST: fast structure-based searching in the PDB.
Nucleic Acids Research, 34(Web Server Issue):W20-W23, July 2006.
[TTHP05] Yuanyuan Tian, Sandeep Tata, Richard A. Hankins, and Jignesh M. Patel.
Practical methods for constructing suffix trees.
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[Ukk93] Esko Ukkonen.
Approximate string-matching over suffix trees.
In Proceedings of the 4th Symposium on Combinatorial Pattern Matching (CPM'93),
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[Ukk95] Esko Ukkonen.
On-line construction of suffix trees.
Algorithmica, 14(3):249-260, September 1995.
[Wei73] Peter Weiner.
Linear pattern matching algorithms.
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